rs50944554 SNP Detail

Summary

• ID
  rs50944554
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121653313 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCAAAGGC AAATTATTCC
  CAATGGAGAT TATTGCTACT TGTCTCATAT TTCTTTTTAA ATTTTGTTTA CTGTCTTTAA
  ACACAGATGT TTTGCTCTGT GAATATAGCC CCCGGTATAG CTCTAAGCTT TTGCTGCAGG
  ATAAACTCCC CTTTATCTCA GGATTTGTAA GACCACTGTA TAAACTTTAT GTATCTCTCC
  R
  GATTTATAAA TTCATTGGGT GTGGTTTAGA AGGTCTGTAA ACTCTAACAA AACGTTAGCT
  TAAAACTTGT AATAGAAATG GTTGATTTCA TATATATATA TATATATATA TATATATATA
  TATATATATA TATTTGCTAT AGCATGCTTG TATGTAACTT GGATTCAACT CCTGTTTAAG
  AAAATAGATA TATTTTTTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135730620	ENSMUSSNP1153667	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss320906455	CHEV_3_121562582	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50944554					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121653313 () rs orientation: forward

Symbol	Name	Function Class
Rr584185	regulatory region 584185	212 bp distal