rs50943721 SNP Detail

Summary

• ID
  rs50943721
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:134642225 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCCA AGTCCGGAGT TGGGAGTCGC
  R
  GCGCGTTTGG TAGCCTCGGT TTACT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147538617	ENSMUSSNP3027852	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50943721					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134642225 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15052	CpG island 15052	within coordinates
Rr601858	regulatory region 601858	987 bp distal
Rr601859	regulatory region 601859	1246 bp distal
Rr601860	regulatory region 601860	within coordinates
Rr601861	regulatory region 601861	91 bp proximal
Tmem50a	transmembrane protein 50A	mRNA-UTR
Tssr39578	transcription start site region 39578	175 bp upstream
Tssr43943	transcription start site region 43943	26 bp downstream
Tssr43944	transcription start site region 43944	61 bp downstream
Tssr43945	transcription start site region 43945	96 bp downstream