rs50943668 SNP Detail

Summary

• ID
  rs50943668
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170825812 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATCT CTGCTGGGCC CCAGTCAGTT
  K
  TGGGTGGTCT TGCTTTTCCT GTTTA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	NZW/LacJ	SM/J
ss60345140	NES15844854	PERLEGEN	MM_PANEL2	f	SNP			T	T	G	T	T		G
ss146150352	ENSMUSSNP1344558	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320115479	CHEV_1_172928374	CHEVERUD	SCREENING_POP	f	SNP								G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	NZW/LacJ	SM/J
rs50943668					SNP	G	G	T	T	G	T	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60345140	NES15844854	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170825812 () rs orientation: forward

Symbol	Name	Function Class
Rr396544	regulatory region 396544	250 bp downstream
Rr396545	regulatory region 396545	188 bp upstream
Rr423178	regulatory region 423178	1187 bp distal
Rr423179	regulatory region 423179	1270 bp distal
Rr423180	regulatory region 423180	within coordinates
Tssr9941	transcription start site region 9941	322 bp upstream