rs50939875 SNP Detail

Summary

• ID
  rs50939875
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:71696247 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCTC CCAAGTGCTG GGATTAAAGG
  Y
  GTGCACCACC ACTGCCTGGC TCTGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146751447	ENSMUSSNP4784955	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
ss320340928	CHEV_2_71703960	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50939875					SNP	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:71696247 () rs orientation: forward

Symbol	Name	Function Class
Gm74965	predicted gene, 74965	972 bp downstream
Rr370575	regulatory region 370575	638 bp upstream
Rr558851	regulatory region 558851	1972 bp distal
Rr558852	regulatory region 558852	73 bp proximal
Rr558853	regulatory region 558853	497 bp proximal
Rr558854	regulatory region 558854	1639 bp proximal
Tssr18292	transcription start site region 18292	224 bp upstream
Tssr18293	transcription start site region 18293	1851 bp upstream
Tssr24499	transcription start site region 24499	1648 bp downstream