rs50938689 SNP Detail

Summary

• ID
  rs50938689
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:19527189 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAAGTTCA CAATATTTCC
  TGCTCTGTAG CTTGACTCTT TACATGGACG CTTACATTAA CTACTTTATT ACTAATGTTT
  TCAATTTGTG TAATTACATG AAGCATCACA GAAAGGTAAT GTTCTGTAGT AGAGCCAAAC
  TTACCTCCTC CCCCCCTCAA GAGAAAAGGG GGTCATTATG AATATGTGTT TATTAAATCA
  K
  TGAGTCCTGG ATCTTGGATT ACTTCTGTAA TGCAACTACA CGATGTGACA TGCCTCACTT
  GTATTTCTGT ATTGGTATCA AAATTGTTGG AAATATTGAA GATTCTAAAA GAAGTAAGCT
  GTACGAAATA GCACTCCTTA GCTAATAATT CAAAGCTGCC TGTATACTCA TGAAGAGACA
  GCTATAGAAA TAAGCACAGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52626612	NES15515230	PERLEGEN	MM_PANEL2	f	SNP	G	G	T	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50938689					SNP	G	G	T	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52626612	NES15515230	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:19527189 () rs orientation: forward

Symbol	Name	Function Class
Tcrg	T cell receptor gamma chain	within coordinates
Trgc4	T cell receptor gamma, constant 4	1539 bp upstream
Trgj4	T cell receptor gamma joining 4	807 bp downstream
Tssr118539	transcription start site region 118539	1321 bp downstream
Tssr118540	transcription start site region 118540	1248 bp downstream
Tssr118541	transcription start site region 118541	1192 bp downstream
Tssr118542	transcription start site region 118542	1114 bp downstream
Tssr118543	transcription start site region 118543	1078 bp downstream
Tssr118544	transcription start site region 118544	1058 bp downstream
Tssr118545	transcription start site region 118545	1032 bp downstream
Tssr118546	transcription start site region 118546	950 bp downstream
Tssr118547	transcription start site region 118547	877 bp downstream
Tssr118548	transcription start site region 118548	858 bp downstream
Tssr118549	transcription start site region 118549	280 bp downstream
Tssr118550	transcription start site region 118550	423 bp upstream
Tssr118551	transcription start site region 118551	1181 bp upstream
Tssr121588	transcription start site region 121588	1310 bp upstream
Tssr121589	transcription start site region 121589	239 bp downstream
Tssr121590	transcription start site region 121590	1305 bp downstream