rs50938426 SNP Detail

Summary

• ID
  rs50938426
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:13079645 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ctatggaag agagactctt tctggaggcc
  tgtagatcat gatgttgaac tctcagttct cccagtacca tatttgcttg gactctgcca
  tgcttctcat catccacgag aatggactga acctctaaaa ctgtaagaca gtcagcccag
  Y
  aaaatgttta ctctttgtaa gagatgcctt ggtcatggtg tctcttcacc gcaatgaaac
  cgtaactaag acaGTCAGGA TGATTGAGGT GAATGTAAGA GCACTATTCC TGGGATTGAA
  GTACTTAATA AGTTCTTGAG GATGCGTTAC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146812711	ENSMUSSNP2100037	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss323254425	CHEV_10_12923707	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50938426					SNP	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:13079645 () rs orientation: forward

Symbol	Name	Function Class
Gm47402	predicted gene, 47402	1325 bp upstream
Rr427749	regulatory region 427749	1620 bp distal