rs50934791 SNP Detail

Summary

• ID
  rs50934791
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148023281 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCTA GAACTTGAGC CCAATCCAAG
  Y
  TTCGTGTAGG GTGGCCTGTT TCTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147987454	ENSMUSSNP6199868	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
ss321415861	CHEV_4_147312933	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50934791					SNP	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148023281 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15284	CpG island 15284	1855 bp distal
Cpgi15285	CpG island 15285	1823 bp proximal
Rr377387	regulatory region 377387	810 bp downstream
Rr398852	regulatory region 398852	1882 bp upstream
Rr604526	regulatory region 604526	1567 bp distal
Rr604527	regulatory region 604527	1002 bp distal
Rr604528	regulatory region 604528	within coordinates
Rr604529	regulatory region 604529	1581 bp proximal
Tssr40234	transcription start site region 40234	1972 bp downstream