rs50933460 SNP Detail

Summary

• ID
  rs50933460
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148912969 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCTGAGAGG AATTTTCTTT GCCACACCCC ACCCCATTCA
  TTCTGAACCA AGCCCAAGAG TGGCTGTCCC TCTTGGGAAA AAAAAAATAA GTCTGTCCAT
  A
  TCCAAGGCCT TGCCCTTACC CCTGCCCCTG CCCTTGCTGG CCCTGTGTTC TAGACTCCCC
  ATGAACTGTT AGGTTCCTGC AAGAGGAGGT GGGAAACCA                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148020482	ENSMUSSNP4754126	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss321423179	CHEV_4_148202621	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50933460					SNP	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148912969 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Casz1	castor zinc finger 1			Intron
				Noncoding-Transcript-Variant
Rr377397	regulatory region 377397			1370 bp upstream
Rr604769	regulatory region 604769			1864 bp proximal