rs50926138 SNP Detail

Summary

• ID
  rs50926138
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:147605971 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TCACTCTGTA GACCAGGTTG GCCTTGAACT CAGAAATTCC
  CCTGCCTCTG CCTCCCAAGT GTTGGGATTA CAGGCGTGGG CCACCACTCC CAGTGATGAT
  A
  CTTTCTTGTG TATTAGTGTG TGAAGTGTCC AGAGGCCTGG TACACCATCA CAGAGCATAG
  ATTACTAAAG CGTCCATACA CCTGTGACAT CTCTGGCCTA G                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147967101	ENSMUSSNP605715	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50926138					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147605971 () rs orientation: forward

Symbol	Name	Function Class
Gm15951	predicted gene 15951	647 bp upstream
Gm69897	predicted gene, 69897	within coordinates
Rr398830	regulatory region 398830	1580 bp downstream
Rr398831	regulatory region 398831	402 bp upstream
Rr604494	regulatory region 604494	1677 bp distal
Rr604495	regulatory region 604495	686 bp distal
Vmn2r-ps20	vomeronasal 2, receptor, pseudogene 20	7 bp upstream