rs50925154 SNP Detail

Summary

• ID
  rs50925154
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:148685917 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATCAGAGA AAGCACAACT
  AGCCCGGTAT TTTATTCCCC ACCACAGAAG CCCAGGGTAT CTTAACTCTA GGCTATAATT
  TCTATTTGTT GACACAATGA AGTAGTTTTG TATCGTATCC ATCTTTTTGT AAACATACAC
  AGCCTATCAG TCTCCAGTGT GCCTTGTGTC GATTCACAGG AAGCCTTCAG CAAGCACCTG
  K
  CAACGAATGG CTGGAACATG GGACCAGAAT CCAGCACTAC CAAAGGATAG TCCCAACAGC
  CACAAGAAAA CTGAGGACTT TAGGAACGAA AACAACTTTA AGGATCGAAA AATGAGGAGG
  GCAAGGAAGA AGCTGGGGAT GGGACAATAG GGAGAGCCTT GCTTAGTAGC AACTAGAAGG
  CTCAATTCCT AGCACTGAGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss136065919	ENSMUSSNP1193085	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss321017014	CHEV_3_148643245	CHEVERUD	SCREENING_POP	f	SNP		G	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs50925154					SNP	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148685917 () rs orientation: forward

Symbol	Name	Function Class
Adgrl2	adhesion G protein-coupled receptor L2	Intron
Rr587237	regulatory region 587237	1362 bp distal
Rr587238	regulatory region 587238	1592 bp distal
Rr587239	regulatory region 587239	1557 bp proximal