rs50920834 SNP Detail

Summary

• ID
  rs50920834
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126402093 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTCCTTC CCAGGCCAAG
  AGTCAGTTAC TGTCCCTGAA GATTTTTGGA GTCAAACTCC TTATCAGCCA TCCAGCTTGT
  TTTGAATTTA ACTGGAAGAT CTTCAGTAAT GGAAAACTCA CACACTCATT ATATAGGTTA
  ATTGTAATTT ATTTTGTGTT GCACAATATA GACTCACAGA CCAACAGGCA TTATTTTCTA
  Y
  GTATTAATGA ATTATTTTGG CCTGGCAAGA TGTCTGGGTG GGGAAAGGTG CTCATCGCAA
  AAGCCTGGCA ACCTAAGTTT GATCTGATTC CTAGACTCTG TGTAAAGGTG AATGAAGAGA
  AGCAATTGCA TGAAGCTGTC TTCCAGTCTT CTTACACAGC CTCATACAAC AACAACAATA
  ATACAATAAC AACAACAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss135837019	ENSMUSSNP5108174	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320946660	CHEV_3_126311362	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs50920834					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126402093 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm17225	predicted gene 17225			within coordinates
Rr584652	regulatory region 584652			743 bp proximal
Rr584653	regulatory region 584653			954 bp proximal
Tssr31576	transcription start site region 31576			1323 bp downstream