rs50919668 SNP Detail

Summary

• ID
  rs50919668
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101867352 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCATGGAG CTGCTCTGCT
  AGCCACAAGA TTTATGAGGC GTGGGATTAC CGTGCCCAGT AGGAAAACAC TACTCTATCC
  ACTGCACGTC TCTCTAAGCC CATGGAGGGG CACAAAGAGG GGCTTCCCAC ACCTGCACAC
  TTCAATGCTA AGAGGAGGGA ACAACCTGTG CTTGCTATGT CACCAGAAGA AGCCCCTCAC
  R
  CCCAGCAGGG ACCTCAGTGC ACAGCTTACA CGCCCCCCAC TGGCCAGCTG AAGACTCCGT
  TTCCCCTTTT CCAGAAGTTG ATTTGTCTGC CTCTTCCATC GTCAGTGACT CCCCAATCTG
  GGCTAACAAT AATAATCTTA TTAATGATGA CAGTAATAGC AATTACCATC TGCTCAGGGC
  GCGCCGTGGG TCACTCTGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147097762	ENSMUSSNP6026788	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
ss320433816	CHEV_2_101877164	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50919668					SNP	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101867352 () rs orientation: forward

Symbol	Name	Function Class
Ldlrad3	low density lipoprotein receptor class A domain containing 3	Intron
Rr561615	regulatory region 561615	within coordinates
Rr561616	regulatory region 561616	27 bp proximal
Rr561617	regulatory region 561617	1930 bp proximal