rs50917016 SNP Detail

Summary

• ID
  rs50917016
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:138195715 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTCTTGAG CCTTCGGTGT
  TTCATTCACT CGCAGGTGGT TGGGAAGGGC GTGGATTCCT CAGTTTGGTT CGCCGGGAGC
  TTCTTGGGGA CTAATTCCCT TTTCTGAGTT CCGCTTCTCT CTGCCAGTGT TCTCCTCAAA
  ATAAAAAAGA AAGAAAAAAT TACGCTCATT CTTAAAAAAA TATCAATGGA CCGAGATGGG
  R
  CTGAAATACG CTCTTCCTCA TGTCTTTCCA CACCCCGCTA TTGAAATACA TAGCGCTAGT
  AGCTGCCAGA TAGTTCAATA TCGATGATTT AAAATATATA TATATTATCT GATTTTATAG
  TTTGAGCGAA TTCCACCAAT CAAGAATTGA GGGGGGTTAG CCGGGTAGTG GTAGCGCATG
  CCAAACTTTA AACCTAGCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss135953636	ENSMUSSNP3858613	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs50917016					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138195715 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13875	CpG island 13875	106 bp distal
Metap1	methionyl aminopeptidase 1	572 bp upstream
Rr586147	regulatory region 586147	within coordinates
Tssr31986	transcription start site region 31986	1073 bp downstream
Tssr31987	transcription start site region 31987	1052 bp downstream
Tssr31988	transcription start site region 31988	169 bp downstream
Tssr35894	transcription start site region 35894	910 bp upstream
Tssr35895	transcription start site region 35895	543 bp upstream