rs50916442 SNP Detail

Summary

• ID
  rs50916442
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:67513973 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACATTTTAT ATATATCAGC
  ATTTAATGTA CGCCACTAGA ATACTGAACA AGGGTGTCAT TTGACTCATG GTAGCCAGTT
  GGGCCTCTCT GCACCATTAA TTTTCAAGCA ATTCCTGAGG CAGACAGATA CAAACATATT
  ATTTTGTCTT TACAGACAGA GGAAGTCGAG ACACGAGGGA CAAATGCTTA CCCAATAGCA
  S
  TAGGAGATCT CGGTACACAC CTCTGATTTC TACCCCCACT GTCTCTTGAA CAACTAGCTT
  ATCCTGTCCA GCTTCCACCC ACCTTGCCTC AGAGAAAGAT CTAAAGCACA AATGTGTGCA
  CATCTTCTTT TTTGTTGAGA ATACTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC
  TCTCTCTCTC TCTCTGTGTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60894248	NES15959629	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	C		C	C	G	C		G
ss321812347	CHEV_6_67486983	CHEVERUD	SCREENING_POP	f	SNP											C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50916442					SNP	G	G	G	G	G	G	G	G	G	C	C	C	C	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60894248	NES15959629	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:67513973 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17512	CpG island 17512	1113 bp distal
Gm42889	predicted gene 42889	within coordinates
Rr631669	regulatory region 631669	1734 bp distal
Rr631670	regulatory region 631670	1183 bp distal
Rr631671	regulatory region 631671	913 bp distal
Rr631672	regulatory region 631672	1010 bp distal
Tacstd2	tumor-associated calcium signal transducer 2	1193 bp upstream
Tssr61256	transcription start site region 61256	1763 bp upstream
Tssr61257	transcription start site region 61257	1292 bp upstream
Tssr61258	transcription start site region 61258	1187 bp upstream
Tssr61259	transcription start site region 61259	1119 bp upstream