rs50915879 SNP Detail

Summary

• ID
  rs50915879
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116287185 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGGTTTTT TTGTTTGTTT
  GGTTTGGTTT CTTTTTTTTT TTTTTTTTTT TTTTTTGAGA CAGGATTTCT CTGTGTAGCC
  TTGGCTGTCC TGAAACTCAC TCTGTAGACC AGGCTGGCCT CGAACTCAGA AATCCACCTG
  CCTCTGCCTC CCAAGTGCTG GGATTAAAGG CAGGTTGTCA TCATGCCTGG CCGATAAGAC
  R
  GACTTTTAAC AATTTATGTT TCAGAATAAG ATGAGAGAGC TGGACGCTCA TACACTTACT
  TAGACCAAAT ATTTCTGAAG CTGCTGTACA TGACAAGTTT TTATACTCTT CAAAAATCCC
  ATTTTAAAAG ATAAATGGAG TCTACAGAAT TCCTGGGAAC ATAAATTTAG GAAGAAGAAA
  ATGACTAAAC ACAAGGAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60437131	NES15943324	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50915879					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60437131	NES15943324	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116287185 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr583728	regulatory region 583728			1182 bp distal
Rr583729	regulatory region 583729			1961 bp proximal
Rtca	RNA 3'-terminal phosphate cyclase			Intron
				Noncoding-Transcript-Variant