rs50909911 SNP Detail

Summary

• ID
  rs50909911
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138671123 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGATG GTTCCTACAG AAAACAGAGC
  R
  AACTGAAAGT GAGGGGAGGG GATAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147661002	ENSMUSSNP5189469	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss321378282	CHEV_4_138499727	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50909911					SNP	G	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138671123 () rs orientation: forward

Symbol	Name	Function Class
Rr398631	regulatory region 398631	within coordinates
Rr603051	regulatory region 603051	1992 bp distal
Rr603052	regulatory region 603052	1424 bp distal
Rr603053	regulatory region 603053	within coordinates
Rr603054	regulatory region 603054	96 bp proximal