rs50908833 SNP Detail

Summary

• ID
  rs50908833
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:77003849 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGACCCAGG GGCCTGCCCA
  GTCTCGCCCA TCCACCTGGC CCACATCCCC ACTTCATCCG CCTTCAAACC TGGAGTCCCT
  GTCCAGGTGA AAAGGGCACA GGGAGGAAGA AAGCAATCTA GAGGACTGTA GTCCACATTT
  TTTTAAAAGA ATACAAATGA TTGATTGCCC TGCACTCTTT TTCAAAACTA TTTCAGAGGC
  R
  AGGATAGGTC CATGTGCTGT CTGTGCCTGG CAGGTCTTTG TGTGCAACTC CACGTGTGTT
  TTTCCATAGT TATACTTAGC ATGTGCACGT GTGTGTCCGA TGACATGTAT TCGTGCACAC
  ATACATGTAG GGGCATGTCC TGGATCTCAG TAATCCTGTC TCTCTTTGTA TTCATGTCTG
  TCTACCTGGA AGCCATGCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss52373570	NES15269448	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs50908833					SNP	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52373570	NES15269448	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:77003849 () rs orientation: forward

Symbol	Name	Function Class
Col18a1	collagen, type XVIII, alpha 1	1498 bp upstream
Cpgi1754	CpG island 1754	1307 bp distal
Gm67721	predicted gene, 67721	812 bp downstream
Rr384956	regulatory region 384956	within coordinates
Rr434420	regulatory region 434420	1365 bp distal
Rr434421	regulatory region 434421	1159 bp distal
Tssr94211	transcription start site region 94211	1369 bp downstream
Tssr98227	transcription start site region 98227	1491 bp upstream
Tssr98228	transcription start site region 98228	1459 bp upstream