rs50908232 SNP Detail

Summary

• ID
  rs50908232
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:76868035 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTGGGTTC TCACACCTGG
  GACCCCATTC GTATAGATGA CCATACCTAT AGTCTAACCT CCCGGCACCC CACCACCTTG
  GGAATCTATT AAACCAGAGT TGCTGGTCGG CCATTCCTCT TTGGACCCAT GCCCCTCTCC
  ATTCGTTCTA CTTTGCTGCC CTCGCAAGTA CTCCGCCAAA ACCCATCAGG AGGAAAGAGG
  Y
  TGGTTTCAGG GAGCCCCGCC CTCTCCCAAC CCACCTCAGG CTGCTAGCAG CCTCCACCTG
  CTGAGCATCA GCTGAACATC CCTGCTGGGG TGAGAGTTTG AAAGATTGGG GGATTGGTGG
  TGAAGGAGGG TGGGGTGGGG CCTAAAACGC TTAGGCCAGA CTTCTGTCCC TGTTAACAGT
  CAAGTAGGTT GATACAAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52376006	NES15271668	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50908232					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52376006	NES15271668	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76868035 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1753	CpG island 1753	265 bp proximal
Rr434376	regulatory region 434376	within coordinates
Rr434377	regulatory region 434377	452 bp proximal
Rr434378	regulatory region 434378	521 bp proximal
Rr434379	regulatory region 434379	795 bp proximal
Rr434380	regulatory region 434380	942 bp proximal
Rr434381	regulatory region 434381	1078 bp proximal
Slc19a1	solute carrier family 19 (folate transporter), member 1	68 bp upstream
Tssr94203	transcription start site region 94203	29 bp upstream
Tssr94204	transcription start site region 94204	57 bp upstream
Tssr94205	transcription start site region 94205	510 bp upstream
Tssr94206	transcription start site region 94206	1039 bp upstream
Tssr94207	transcription start site region 94207	1059 bp upstream
Tssr94208	transcription start site region 94208	1089 bp upstream
Tssr94209	transcription start site region 94209	1103 bp upstream