rs50908223 SNP Detail

Summary

• ID
  rs50908223
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:143746575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACCATCAGA AAACACAGAT ATTTACATCA TGGTAGAAAA
  ATCACAGTTA TGAAGTAGCA ATGAAAATAA TTTTATGACT TCCAGAAGTG GCTTCTTTGG
  Y
  CATAACTGTT TCCTCCTTGA GAAGACCTGG ATTTCTGTGA CTGAGTCATT ACTTGGCACC
  ACCCCTTTCA TGTCAAGATG GGACACCAAG GACATAAAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147774497	ENSMUSSNP1980140	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs50908223					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:143746575 () rs orientation: forward

Symbol	Name	Function Class
Rr566332	regulatory region 566332	499 bp distal
Rr566333	regulatory region 566333	417 bp proximal