rs50908209 SNP Detail

Summary

• ID
  rs50908209
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:144921712 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTAA GGGCGGCGGG TGCCTCCCAG
  K
  ATGCTGGGGG CTTAATGAGC AACAG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147848407	ENSMUSSNP6960886	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	G
ss321412793	CHEV_4_144785045	CHEVERUD	SCREENING_POP	f	SNP				T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50908209					SNP	G	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:144921712 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15267	CpG island 15267	within coordinates
Rr398672	regulatory region 398672	within coordinates
Rr604318	regulatory region 604318	1925 bp distal
Rr604319	regulatory region 604319	148 bp distal
Rr604320	regulatory region 604320	773 bp distal
Rr604321	regulatory region 604321	within coordinates
Rr604322	regulatory region 604322	34 bp distal
Rr604323	regulatory region 604323	1553 bp proximal
Tssr44481	transcription start site region 44481	178 bp upstream
Tssr44482	transcription start site region 44482	149 bp upstream
Tssr44483	transcription start site region 44483	98 bp upstream
Vps13d	vacuolar protein sorting 13D	137 bp upstream