rs50903836 SNP Detail

Summary

• ID
  rs50903836
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:89230688 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              NNNNNNNNNN NNNNNNNNNN
  NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNACCA TTTGCTTATG
  ACTACTCCAC TTAGTCCTCA GCAGAAGACT AGATGTCTGC TTCTGGGTGA AACGTCTTCC
  CGCCCCCCCC TCGGGAGTCC GTCATTCACG GTTGCCAGTG TGCACAGGTA GAATGGGAGG
  Y
  GGAGGAAGAG AGATGGGTAG TTGAAATCAG AGCTTCTGAA GTGAAGGACA CTGGTGTTTT
  CCTAGCAAGT GGAAGAACTA AACCAGCAGG TTGATATTGA TGAGTGTGAA GCAAATGGAT
  TCTAGGATAT TTTTTATCAG TAAAGCTTTG CTACTCTGAG ATTTAATTCA CACTTAAATG
  TAGCACAGTA GGCTGTGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63332949	NES17507771	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50903836					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63332949	NES17507771	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:89230688 () rs orientation: forward

Symbol	Name	Function Class
Cdkn2b	cyclin dependent kinase inhibitor 2B	1412 bp upstream
Cpgi14441	CpG island 14441	1186 bp distal
Gm12610	predicted gene 12610	within coordinates
Rr398336	regulatory region 398336	1198 bp downstream
Rr595183	regulatory region 595183	1804 bp distal
Rr595184	regulatory region 595184	1278 bp distal
Rr595185	regulatory region 595185	1014 bp distal
Rr595186	regulatory region 595186	1186 bp distal
Rr595187	regulatory region 595187	1020 bp proximal
Tssr42412	transcription start site region 42412	1436 bp upstream
Tssr42413	transcription start site region 42413	1426 bp upstream