rs50894767 SNP Detail

Summary

• ID
  rs50894767
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148173899 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCAACATA GCAAAAGTTG
  GAAGACATTC AGTCAGGACA ATTAACAGGA AGTCTCCCCT GCTGAGCCTT CAGACATGCT
  GAGAGCTCTC AGGAGGCGGG AGCTGCCCAG CCTGGGCTGG TGGGTGTGAC TCCAGAAGAA
  TAGAAGCCAT ATGGGAACCC ATGAGACCCC CTGAGTGGAC ACAAGATGAC ATCTAGGTCA
  M
  AGATCCCCAG ATAGGACTTT TCTTCTGGGA AGATGAGAGA AGTTGGGGCG GGGCAGACCT
  AATTTAATAG CCCATTTGAA GGCACAACCC TCAGTCCCCA AGGAAGGCGA ACTACAAGTC
  TGCCATTGTA ATGGACAGCT ATTCTGATTT TGTTTCTAGG CAGAGTATTT CTGTGATGTC
  CAGGCTGGCC TTGAACTTGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147992056	ENSMUSSNP29675	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50894767					SNP	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148173899 () rs orientation: forward

Symbol	Name	Function Class
Agtrap	angiotensin II, type I receptor-associated protein	1411 bp upstream
Rr377390	regulatory region 377390	within coordinates
Rr604583	regulatory region 604583	1422 bp distal
Rr604584	regulatory region 604584	921 bp distal
Tssr44579	transcription start site region 44579	1415 bp upstream
Tssr44580	transcription start site region 44580	1386 bp upstream
Tssr44581	transcription start site region 44581	1373 bp upstream
Tssr44582	transcription start site region 44582	252 bp upstream
Tssr44583	transcription start site region 44583	224 bp upstream