rs50891183 SNP Detail

Summary

• ID
  rs50891183
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79287623 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATTCTGTT TCAAGCTTTG
  TTCTTCAATA ATTGATTAGA GGAGACACGA AGGAGGTAGC TTTGTCTTGT CCAGTGGTGT
  TTTCAGTGAT TTTATGCAGA AAGACAAGAA ATGCTGTTAG GGTTACAGAA ACACAAACCC
  AGGAAAAAGA GAAAGTGGGG GGCAAGATGA CAAATTGTAA AAGAATGTTA TTGTTTGGGG
  R
  AACCAAACAA ACAGGGTTAT GATGCAAGAA GAGTAAGTAT GAACTTTGCA CATGGAGCTA
  GTTATCAATC CAAGTGGAAA GGTAGGTAAG GATGATGTCA TTGGTGTGGA GACAGTGGAT
  GACTGTAAAC TCGAGATCTG CACAGAAAGT GACATGCTCG TGACAAAGCT GAAAATGATG
  GCAGTCTGGG CTTGCCAAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	MSM/Ms
ss135371762	ENSMUSSNP3116655	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	MSM/Ms
rs50891183					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79287623 () rs orientation: forward

Symbol	Name	Function Class
Rr578508	regulatory region 578508	1888 bp distal
Rr578509	regulatory region 578509	597 bp distal
Rr578510	regulatory region 578510	within coordinates
Rr578511	regulatory region 578511	1122 bp proximal
Spmip2	sperm microtubule inner protein 2	Intron