rs50889475 SNP Detail

Summary

• ID
  rs50889475
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163379909 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C ACCCGACGGT GCACACCTGT CATCCTAGTA TTTAGAAAGC
  ACAGTCAGGA GGACCAGAAG TTCAAGGTCA CTCCCACTAG TTAGCGAGTT TAAGGCCAGC
  C
  TAAGCTACAT ATACAAAACC CTACCGAAAA ATAAAAATCT GAGACTTGAC TCCCTGGGAA
  ACCGAGGCTC CCTGGCTGAG CCGGCTCTTC CTTAGCCAAG G                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148205382	ENSMUSSNP1264912	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50889475					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163379909 () rs orientation: forward

Symbol	Name	Function Class
Hnf4a	hepatic nuclear factor 4, alpha	Intron
Hnf4aos	hepatic nuclear factor 4 alpha, opposite strand	within coordinates
Rr569403	regulatory region 569403	1970 bp distal
Rr569404	regulatory region 569404	1258 bp proximal