rs50888356 SNP Detail

Summary

• ID
  rs50888356
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:149392345 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C CAGCAACCGA GACCGACGCG GAAGGTGACC AATCGCGATG
  AAGACCTTGA GACAGATGAC CAATAGTAAA GCGTGGCTGG AAGAGGGGGC GGGAGGTGCC
  T
  GCGGAGCGAC GGAGACACTC GAGCGCCCCC TGGTGGTACG GGAGCCGATG CGGGTGCGGG
  TGCGGGCGTG CCTGGTGGGC GAAGCCGGTG TCCAGAGTTC C                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss148031047	ENSMUSSNP3824081	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J
rs50888356					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149392345 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15323	CpG island 15323	within coordinates
Kif1b	kinesin family member 1B	mRNA-UTR
Rr398866	regulatory region 398866	within coordinates
Rr604876	regulatory region 604876	393 bp distal
Rr604877	regulatory region 604877	558 bp distal
Rr604878	regulatory region 604878	within coordinates
Rr604879	regulatory region 604879	20 bp proximal
Rr604880	regulatory region 604880	1706 bp proximal
Tssr44642	transcription start site region 44642	185 bp upstream
Tssr44643	transcription start site region 44643	150 bp upstream