rs50884969 SNP Detail

Summary

• ID
  rs50884969
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89261557 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTAG GAGTACTATG GAGATTTTCC
  W
  GAGAGCCCCG AGTGTTTTCA GCAGC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	MSM/Ms	SM/J
ss133371410	ENSMUSSNP2708447	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T		T
ss321851863	CHEV_6_89234569	CHEVERUD	SCREENING_POP	f	SNP			T		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	MSM/Ms	SM/J
rs50884969					SNP	A	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89261557 () rs orientation: forward

Symbol	Name	Function Class
4930512J16Rik	RIKEN cDNA 4930512J16 gene	within coordinates
Rr379731	regulatory region 379731	377 bp upstream
Rr634091	regulatory region 634091	1304 bp distal
Rr634092	regulatory region 634092	620 bp proximal
Rr634093	regulatory region 634093	1536 bp proximal
Rr634094	regulatory region 634094	1762 bp proximal