rs50880088 SNP Detail

Summary

• ID
  rs50880088
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148644613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGAGAGA GAGAGAGAGA
  GAGAGAGAGA GAGAAAGAAA GAAAGAAAGA AAGAAAGAAA GAAAGAAAGA AAGAAAGAAA
  GAAAGAAAGA GGAAGAAAGG AAGAAAGAAA AGATTTTCCT GAGGGTCACA TACCTCAGCG
  GTTGGGAAGT AATGAGAATG GTTGGGTTTC TGGGTCTGAA TTCCGGTACC AACCAACCAC
  M
  AAAAAACAAA ACAAACAAAA AAAAAAAGCA CTGCTAAAGG CCAGTGAACA TAGGATAATC
  GCATGGCCTC TGGTTGTTAA GAGAGCATAC ATGGAGCCCG GGCTAGCCTG GAACTTGCTA
  TGTAGACCAA GCTGGCCTTG AAAATCTTAG AGATCAACCT TTCCCTACCT CTTGAGTGCT
  AAAATAGATA TGTGCGCCAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148011412	ENSMUSSNP2643880	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50880088					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148644613 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15305	CpG island 15305			1213 bp distal
Exosc10	exosome component 10			Intron
				Noncoding-Transcript-Variant
Rr398859	regulatory region 398859			1633 bp downstream
Rr604703	regulatory region 604703			1684 bp distal
Tssr40280	transcription start site region 40280			1687 bp downstream
Tssr40281	transcription start site region 40281			1656 bp downstream
Tssr40282	transcription start site region 40282			1410 bp downstream