rs50877931 SNP Detail

Summary

• ID
  rs50877931
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87343055 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTCCCCAGC AGCCAAAATG TGGTGTTGAA AGCATGTGAT
  TATTAAACCC CAAAGTTTTC ACTTTGTCTG TAGGGCAGGA AACTAATTAA CAATTAAATG
  Y
  GGCTACTTCT ACTTCCTTTT TCTGATTCAA GTTACACTCA ACTGTTTTAG AAGAGCAGTT
  CCCCAGATTT CTCCTTGGAG CTGTGAGTGA CTACCATTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60422895	NES15921556	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	T		C	T		C	C	T	C		T
ss135461479	ENSMUSSNP2591043	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T
ss320833444	CHEV_3_87239670	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50877931					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60422895	NES15921556	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87343055 () rs orientation: forward

Symbol	Name	Function Class
Fcrl5	Fc receptor-like 5	29 bp upstream
Rr397756	regulatory region 397756	within coordinates
Rr579488	regulatory region 579488	within coordinates
Tssr29807	transcription start site region 29807	16 bp upstream
Tssr29808	transcription start site region 29808	50 bp upstream
Tssr29809	transcription start site region 29809	72 bp upstream