rs50877486 SNP Detail

Summary

• ID
  rs50877486
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:41573657 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGTTTTCG CTTAGCACAT
  CATGCTAAAG AGACTATGAG CATAAAATGA TAGAAGTCCA GTCTGTTATG GATTATGTTC
  TGCCTTTTGG TTAGGAAGAA CGGAATTACT TTAGCCATAT GCTTTCATGT AACATATATA
  TCTACAGTAA GACAAATAAA TGCACATATG ATTAGGTAAA ATAATACTGC TGTTAAGAAT
  R
  CAAAGAATTC CGTGTAGTTC AAAAAATGTT TGTAAGATAA AATTGTTTAA AATTGGTTTC
  TTGACAACAA TGCCTAATAT TAAGACTAAT GTTTTGACAC TTTAAATAGA ACTAATGCAA
  AAATCTCCCA ACCTTTTTTT TTTCGTTTTT TGTGATACTG AGCATAACAA AGCTGGTCAT
  TAGTCATTGG TGTAAATGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60397307	NES15898381	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50877486					SNP	G	G	G	G	G	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60397307	NES15898381	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41573657 () rs orientation: forward

Symbol	Name	Function Class
Rr575994	regulatory region 575994	1938 bp distal
Rr575995	regulatory region 575995	313 bp distal