rs50876826 SNP Detail

Summary

• ID
  rs50876826
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141302423 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACTCTAAG CAATCCTCCG
  TCCTCTGCGC CCCCGACCCC CCATTTCTGG AATTACAGGT GTGTGCCACA CACCCTATAC
  CTCTTTATAT CCGTTCCAGA CGGGGTCTCA AAGTACCTCA GGCCAACCTG GTACTTACTA
  TGTCCTCAAA GATAACTTTA AACTTTGGCT CCTCCTGCCT CCACTTCCTT CCGGTACTTC
  Y
  GGCATGCACA GGCCTGCTCA GCCATCACCT GGTCCCCTCT GAAGGTCTTT CTGGTTGAAT
  AGGCAGCAAC AGGCTCTACA TGCTAGTGAG GTCATACTCC AAGCACCTGG GTGTGGCCTC
  AGGCGAGAGG GACCCTGGCA CAGGGCCATG GGCAAGTTCA GCGCTCCCCA GCAACTCCTG
  ATGGTCCTTT GTTCAGAGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147740989	ENSMUSSNP2285616	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50876826					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141302423 () rs orientation: forward

Symbol	Name	Function Class
Fblim1	filamin binding LIM protein 1	950 bp downstream
Gm68503	predicted gene, 68503	within coordinates
Rr377309	regulatory region 377309	1135 bp downstream
Rr603811	regulatory region 603811	931 bp distal
Rr603812	regulatory region 603812	within coordinates
Rr603813	regulatory region 603813	52 bp proximal
Rr603814	regulatory region 603814	460 bp proximal
Rr603815	regulatory region 603815	1947 bp proximal
Tssr40085	transcription start site region 40085	1824 bp downstream
Tssr40086	transcription start site region 40086	1586 bp downstream
Tssr44332	transcription start site region 44332	1693 bp downstream