rs50874351 SNP Detail

Summary

• ID
  rs50874351
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:19528291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACTCATAG TTGCTTGTAC
  CACAAAGATA ATTACCTCCA TCTTTAGTGG GTAACGCTGT AAGATTAATA TAAAGACTGA
  GTATTTTTAG TAGAAGTTGT AGATTTGTTC TTATTTCCAC CAAATTCAAG ATACTACAAA
  TCATTTGAAA GGGAAGCTTT AAAAATGATG CAGCTCACAA ACCTAGAGTT GGTTAGATGC
  R
  GAAATGAGAT GCTGTGGAAT GGTAAACACT AGAAAATGCA TGATTGGCAG CAGAGATCCA
  TGGGCACAGC CAAGGGGTCT AGTCAATGGT CAGTAGTGTA CTTGGAAGGA GATGGACACT
  AAAGCAGGCA GCCCACGTTG TGATATCTCA TATGGGCACT TTGAGATTCA GCTAAGTAGA
  GGGTGGGCTA CTTGAATTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52626598	NES15515258	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	G	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50874351					SNP	A	A	G	A	G	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52626598	NES15515258	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:19528291 () rs orientation: forward

Symbol	Name	Function Class
Tcrg	T cell receptor gamma chain	within coordinates
Trgc4	T cell receptor gamma, constant 4	437 bp upstream
Trgj4	T cell receptor gamma joining 4	1909 bp downstream
Tssr118547	transcription start site region 118547	1979 bp downstream
Tssr118548	transcription start site region 118548	1960 bp downstream
Tssr118549	transcription start site region 118549	1382 bp downstream
Tssr118550	transcription start site region 118550	662 bp downstream
Tssr118551	transcription start site region 118551	79 bp upstream
Tssr118552	transcription start site region 118552	1835 bp upstream
Tssr121589	transcription start site region 121589	855 bp upstream
Tssr121590	transcription start site region 121590	203 bp downstream
Tssr121591	transcription start site region 121591	1068 bp downstream
Tssr121592	transcription start site region 121592	1648 bp downstream