rs50873163 SNP Detail

Summary

• ID
  rs50873163
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:97978002 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAAACTCT ATCCATATAC
  AAAGGAAAAC TCTCTTAGCA AATGTTCTAT GAAACTCAAG TCAACAACAC AAAAAAGTTT
  TAATTAAATG TTCTAACAAC CCAAAGCTAT ACTAATTTGA TACTAGCATG CTGACAGTTG
  GAACACTGGC AGGGAAATAT TTAAAGTCTT TGTTTTCCAT AATGAAATCA TTATGTTTCT
  R
  TAAGAGCAGA AAGCTTTGTG TGATTAATAA AAACACTACA ATTCATAACC TGCAATAGTC
  TCACTCTGAG CTGAGGTGTT TCAAGTAGCA TGAGTTGGTA CTGCACAGGG TGACAATGCA
  TGGGGCAAAG CACACATGCA CCCTGTGCAA GCCTGCAAAG ATGTCCTGCA GGGCAGCATG
  GGCCAGTGCT GCCCAAACAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss147085073	ENSMUSSNP3211480	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs50873163					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:97978002 () rs orientation: forward

Symbol	Name	Function Class
Nfia	nuclear factor I/A	Intron
Rr367651	regulatory region 367651	1633 bp upstream
Rr595683	regulatory region 595683	108 bp proximal
Rr595684	regulatory region 595684	1467 bp proximal
Rr595685	regulatory region 595685	1622 bp proximal