rs50873058 SNP Detail

Summary

• ID
  rs50873058
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156956073 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAAAATGA TAGTCTTCTA
  CCTTGACCCC AGCCTGGGAG CTACCCCGAC ACCCAGAAGA AAGAGTGACT GTGGCGTAGG
  AAGAGGGGTG GAAGGAGCCC CGCGTCCTCA GGCTGAAGGG AAGGCAGTTT GCCTCCCACA
  GTGCCCATGA AGCCAGTGTC AGTCCATGCC AGGACCACAG AGCCCAGCTT CGGGCCAGGC
  R
  GTGTAGGCCC TACTGCTACA TTTATACAAA GCTTCTTACC ACCGCTTCTG GGAGTCTTCA
  GTGCGTACCT GGCAAAATAA TCCCATTTGT CTACGTCGAT GCCATTCCTC TTGTTAGACA
  CTATCTCGTA AAGGAAGCTC TTCGTGGCAG GGCGGCCTTT ATACGGCCAC TGGAAAACAA
  GAGAATCTCA TGGAAGATTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148092140	ENSMUSSNP199013	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss320584240	CHEV_2_156939889	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50873058					SNP	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156956073 () rs orientation: forward

Symbol	Name	Function Class
Rr568435	regulatory region 568435	786 bp proximal
Samhd1	SAM domain and HD domain, 1	Intron
Tssr27140	transcription start site region 27140	1618 bp upstream
Tssr27141	transcription start site region 27141	1289 bp upstream
Tssr27142	transcription start site region 27142	748 bp upstream
Tssr27143	transcription start site region 27143	124 bp downstream