rs50872336 SNP Detail

Summary

• ID
  rs50872336
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:100993275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C CCCTAAAATG GTCCCATTTT TATTGACCTC AAAACTTCCT
  CTTACCACTG GTCATTATAC TGTAGCTTAT ATGCACTCAT AGGATATTAT TAATAATCAT
  M
  TATCTCTTCC CATTATGACC ATTATGTGTC TACAGCAGTA CCTGGTTCAC AAGCTATCCA
  ATAAGTATCT GCCAAATGGA AGACATGCAA GGTTCTCCAC C                    
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss135544222	ENSMUSSNP3196022	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs50872336					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100993275 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm43465	predicted gene 43465			within coordinates
Ptgfrn	prostaglandin F2 receptor negative regulator			Intron
				mRNA-UTR
Rr581954	regulatory region 581954			575 bp proximal