rs50871489 SNP Detail

Summary

• ID
  rs50871489
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:44074358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACAGCTTG TGGTCTATCT
  CAGTCAAGGA TGAAGCTCTG GTTTGCATGG TATTAGTGTA GCCATGTTGG ATCCTGCAAG
  GGTCATCCCA TCATGAAAGG ACAGACAATG AGTGGTTTTG TACACTGAGG TGACATTGTC
  TACCTTTCTG TCTGAGATCA GCAACCATCG ATTTGTAAGT TGACCAGGTC ACCATTCATG
  W
  ATGCTCTGAT AACACGTCAA TTTCCAACAC ATTTCACATC ATACTTTTTT TTTCTAAATA
  CCATCTGAGC TGTTGGGTAG AGAATGGATT TGAATGGATT TGTTGAGAGT CAAGAGTTGG
  TTCCAGTGAA AATTCCACTG AAATAGATAT GCAATTCATC TGGATGTAAA ACTCATGAGA
  CTTATTATTG ACGGGTTATG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146246422	ENSMUSSNP1843332	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss321100056	CHEV_4_44087230	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50871489					SNP	A	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:44074358 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14207	CpG island 14207	1291 bp distal
Gne	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	Intron
Rr591149	regulatory region 591149	1591 bp distal
Rr591150	regulatory region 591150	1094 bp distal
Rr591151	regulatory region 591151	1361 bp distal
Rr591152	regulatory region 591152	172 bp distal
Tssr41482	transcription start site region 41482	1801 bp upstream
Tssr41483	transcription start site region 41483	1665 bp upstream
Tssr41484	transcription start site region 41484	1627 bp upstream
Tssr41485	transcription start site region 41485	1337 bp upstream