rs50870407 SNP Detail

Summary

• ID
  rs50870407
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:149409650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGCT GGGATTTGAA CTCAGGACCT
  C
  TGGAAGAGCA GTCAGTGCTC TTAAC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss148031261	ENSMUSSNP64824	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs50870407					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149409650 () rs orientation: forward

Symbol	Name	Function Class
Rr604885	regulatory region 604885	918 bp distal
Rr604886	regulatory region 604886	488 bp distal
Rr604887	regulatory region 604887	292 bp distal
Rr604888	regulatory region 604888	59 bp distal
Rr604889	regulatory region 604889	439 bp proximal
Rr604890	regulatory region 604890	439 bp proximal
Tssr40322	transcription start site region 40322	1216 bp downstream
Tssr40323	transcription start site region 40323	1201 bp downstream