rs50869969 SNP Detail

Summary

• ID
  rs50869969
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:75773302 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATAC AATCACGGTG AGCAGTCATT
  C
  TGGTGCATGT GGGGGTGGAG GGGTG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147174717	ENSMUSSNP3534452	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss323363296	CHEV_10_75400213	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50869969					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:75773302 () rs orientation: forward

Symbol	Name	Function Class
Chchd10	coiled-coil-helix-coiled-coil-helix domain containing 10	Intron
Gm867	predicted gene 867	255 bp downstream
Rr384937	regulatory region 384937	within coordinates
Rr401998	regulatory region 401998	1423 bp downstream
Rr434184	regulatory region 434184	1885 bp distal
Rr434185	regulatory region 434185	within coordinates
Tssr94149	transcription start site region 94149	1596 bp downstream
Tssr94150	transcription start site region 94150	1560 bp downstream
Tssr94151	transcription start site region 94151	1209 bp downstream
Tssr94152	transcription start site region 94152	1176 bp downstream
Tssr94153	transcription start site region 94153	1146 bp downstream
Tssr94154	transcription start site region 94154	1135 bp downstream
Tssr94155	transcription start site region 94155	1051 bp downstream
Tssr94156	transcription start site region 94156	294 bp downstream
Tssr94157	transcription start site region 94157	273 bp downstream
Tssr94158	transcription start site region 94158	135 bp downstream
Tssr98154	transcription start site region 98154	920 bp downstream