rs50867537 SNP Detail

Summary

• ID
  rs50867537
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38842955 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAGCCTCC CTCCAGGATG
  GAATGCTTCC ATTCAGAGAA ACTAACCTAT AACATACCTA CTGAAGCTGG GATGTGAAAA
  TGTGGTATTG AATAGGAAGT TGGGTCAGAA GGCTTAAAAT GTACCGTTTG GACCAAAGAA
  GAGGTGCTTT TTCTTCTTTC TTTTTTAATC ATGGGATAAA CAACATGAGA TCTTACTAAT
  K
  TCATCCTTTA AATCTCAACT GTACAAATGA GTCATGAAAA CCTGAGTGAA GGACTCAAGC
  CTGTGCCCCT CGCTTCATTC ACCTGCAGAG TGAATGATGT CATTAGTGTC TCCTAGTTAC
  CAGGAAGTAG CAGTACGTGC AGCATCCACA GAGGATGCCA TAGCAACAAG GCTATTACAA
  AGGATGCCAC AGAGACTACT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss60388738	NES15898907	PERLEGEN	MM_PANEL2	f	SNP	T	G	G	T	G	G		G	T	G		T
ss320723079	CHEV_3_38687728	CHEVERUD	SCREENING_POP	f	SNP							T				G
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs50867537					SNP	T	G	G	T	G	G	T	G	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60388738	NES15898907	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38842955 () rs orientation: forward

Symbol	Name	Function Class
Rr575703	regulatory region 575703	30 bp proximal