rs50866773 SNP Detail

Summary

• ID
  rs50866773
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101471410 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAGCAAGC ATGACTTTAT
  TATACTTAAT AGGTAGCTGT AGCTAACAGG TGCATTCTCT AACTTCATTA TTGAAAAATT
  TATGACACCA GATGACCTCC TAGACACTGA AGGTGACAAT ACTGAGGCCA TTTAAACCTG
  GAAAAGGATG ATTTTCTGAA ACCTCTCTTG GTTTAATTTA TTTATGCATA AATGTAGCAA
  S
  GAGAAAATGC ACTGAGATCC CTTGGAAAGG CCACCACGTC CTACACATGT ACAGGGTTGT
  TAGAGAAACC TCAAAGGCTC CTTTAAATCT TGTAGGATAA ATCAACATAT GTGAAATTTA
  CAAAATAGTC CTATAAAATA TGACCAAAAA ATATGACATG GCAAAAAAAC TGCATAGATC
  TCAGCACAAA ATATAATAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147079223	ENSMUSSNP6340919	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G	C
ss320429690	CHEV_2_101481222	CHEVERUD	SCREENING_POP	f	SNP				G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50866773					SNP	C	G	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101471410 () rs orientation: forward

Symbol	Name	Function Class
Rag1	recombination activating 1	mRNA-UTR
Rr561526	regulatory region 561526	918 bp distal
Tssr25364	transcription start site region 25364	942 bp upstream
Tssr25365	transcription start site region 25365	829 bp upstream
Tssr25366	transcription start site region 25366	202 bp downstream
Tssr25367	transcription start site region 25367	498 bp downstream