rs50857610 SNP Detail

Summary

• ID
  rs50857610
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108429140 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCACCTT CACTGGCACC
  CATAAAGTTG TTAATTGTTT TTCTTTGTTA CTGTTGGTCA CAAATCAATT CTGTGCCTGT
  TTGATCTCCC AGTAGTTTTC GGCCAGGATT CAGTTACAAC TTCCATTCAG CCAGGGAATT
  GCTAGTCAAT AATATGTATA GAGCAGCCTA GCACGGGTTG GAATGGGACA GAGAAACAAG
  Y
  TCTCATCTTT GGAGCTCATC CTCTCGGACA CCTTGCTGTG CACCCTACCT GCCTTGACGG
  CATGATGCCA GAGTTGGATG CTTTCCCCAT ACAGCAGCAG GACAGCCCTT CCATAGCTAC
  CATGTCTTTC TTAGCATTAT TGTCAGTGAC ACTTCCTAAG AGAAGCCTGG TCATCTTGTC
  CCCTGTCTTC AAAGTCTCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

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SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss133502631	ENSMUSSNP992630	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50857610					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108429140 () rs orientation: forward

Symbol	Name	Function Class
Gm35165	predicted gene, 35165	within coordinates
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636110	regulatory region 636110	1567 bp distal
Rr636111	regulatory region 636111	1464 bp proximal