rs50854572 SNP Detail

Summary

• ID
  rs50854572
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:71763808 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCTGTGTT TACGAGGCTC
  CCGGAAAAAC AGAGCTGGAA GCTCTTGCCT ATAGCAGCAC CCATGTAGCA GCTCCTGTTT
  CCTCATCCCC ACCCTTGTGC TAGCCCACTT TTCACACCAC AGACTACATC CACTCTCTTG
  ACTTGCTGCT GGAAACATAA CTTTGCCTTT GTAACCAGTA ACCACAAGGA GGCAGTTTTG
  G
  CAACAGCCTG CTGTCTGACT AGATGGGCAT CATTCACTGG GAAATCGAAT TATGTTTTCT
  CATTCCTTTA TTTTATTCCC AGTCAGTCAG TCTGACCTTT TAAAAATAGG ACTCAGAGTT
  GCTATTTCTA GGATGATAAG AGGACGTTCT ATAGGTGTAA TGCAAGAAGG CATGGAAAGA
  TAAAGATGAG ACAGGAAGGG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133277279	ENSMUSSNP6712259	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50854572					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:71763808 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Reep1	receptor accessory protein 1			Intron
				Noncoding-Transcript-Variant
Rr632005	regulatory region 632005			2 bp distal
Rr632006	regulatory region 632006			1364 bp proximal