rs50854193 SNP Detail

Summary

• ID
  rs50854193
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:141979860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTGGTAA AGTCCCCCCT
  TTGCTTTCTT TTGAGCTTTT AAGCCTTTCA TTTAAAAATA CATTACCAAT TCAATTAACA
  AAAAGTACAA TATATGTTTT TAAAATCAAG TCTTCTCATG GTATTTTCTA CACTATATAG
  CATAGTAAAC ACACTTCCTC ACCTTTTGCA CCAAAGCATA TCTGTGTGCT AGCCTTTGAA
  Y
  ATTCCCACTT TTTGTATTGT AATATATCAT GAAACATGTT TATAAAATTA CAGTTCTCAT
  AATATTTTTA AATAGCACAT CAAAATACTC TGGAATGTTC TGCCCCATTC TATTTCATTT
  GGGGGCATGC TGGCTACATA CCAAGTTCCA ACACAAAAAA ATAGTTTTTG TTTTTGAAGA
  AAAGGAAGTA CTTACTATTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
ss61087918	NES16611997	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T		C		T
ss320999838	CHEV_3_141937063	CHEVERUD	SCREENING_POP	f	SNP									C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
rs50854193					SNP	T	T	T	T	T	T	T	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61087918	NES16611997	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141979860 () rs orientation: forward

Symbol	Name	Function Class
Pdlim5	PDZ and LIM domain 5	Intron
Rr398078	regulatory region 398078	1002 bp upstream
Rr586404	regulatory region 586404	401 bp proximal
Rr586405	regulatory region 586405	1005 bp proximal
Rr586406	regulatory region 586406	1133 bp proximal