rs50853009 SNP Detail

Summary

• ID
  rs50853009
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:56299803 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGTTTTAC AAGATAAAGA
  TGCTTAGTGT AAAATTTCAG TTTTGTTTCT GAAAAGCATA CAAGAGCCTT AAGTTCTGGA
  AACTACACAG CAATAAACTG TACTCAAAAC AAGGCCTGGA AGAGTTCAGT GTGTGTCAGA
  CTAATTTCAC AGGAATCTAA ATTTCACTTT GGGGGAAGAA ATCCTAGCCT TCCAGAAGAT
  R
  CACGGATCCT ACAGCAGTTG TTGGTTGTTT TCAGTGCAAT TGCCAGGAAC ACAGAATCCA
  TGCCTGCTTT CCCCACAGAG CCCTTCAGAC CTCTGTCTGT CAAAACAATT GACAGGCTGC
  AGCATGGCTC CTTGTTTCCA GATGGCCTCG TGAAGAAATG TTGCGAAGTA GGGAGAGTGC
  TGGAGAGCAG GGGAGTGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133224538	ENSMUSSNP1824650	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50853009					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:56299803 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pde1c	phosphodiesterase 1C			Intron
				Noncoding-Transcript-Variant
Rr631057	regulatory region 631057			within coordinates