rs50851338 SNP Detail

Summary

• ID
  rs50851338
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:125102083 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAATATATC GAAAAGTGGT
  ATGTATTTAA ATGCCTTGGT CCCTAAAATT GGGTTGAAAC AAATAATAGC TTGCAGACAG
  TAATTTAATT CTGATAAACT GTGCTCTTGC CAAGACTCAG ATCCTCTTAG ACTCCAGAGA
  AAATGCTGAG ACTAGCAGTT ATTTGGGTTA TTTTTACTTT AATTCCACTT CTCCCTTTGT
  Y
  TAATGTCACA TAATTCTGAC CTTTATTACC ACACTTATCA ACTTGCTCAC CTGCTCAGCT
  TCTGTTTCCA GTATATTTTC CTCAATATTA TCATGATATT GTTTTGTCCA AGGTTTCCCT
  GAAAAGTTCA TTACAGTTAA GCAATGCATG TAAAAGAATA TAATCTTTGA AATTAGCACA
  TGGCAATTCT GACAGTGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135806143	ENSMUSSNP6626494	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss320935454	CHEV_3_125011352	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50851338					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:125102083 () rs orientation: forward

Symbol	Name	Function Class
Rr584607	regulatory region 584607	1376 bp distal