rs50849480 SNP Detail

Summary

• ID
  rs50849480
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:105099026 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATGTTGGC AACACCAGGG
  CTGCCAGTTG CCTGCTGAAC CAGGATGGAT GTGGTGCAAT TATTCTCTGT ATTTATTTGT
  ATGAAATTAG ATTTGACTGG GGAATGTCCT CTCCCTCTTC TGAATTATTA ACGTCCAATA
  AAAGGTTATA GCTAAATTCC TAGACAACCT CACGTGTGGA AATAAAACCA TCATTTCTGT
  Y
  TTAACACAGC TGCTATGCAT TTCCCTCTTA TTATTGAGGA ATACAAGAGA GAGGGAAAAG
  AATGGTGATT TTCTTCAGTT CTCAGGGGCT CAGGGTTCTC TCTGGCAGTT GGCCTCCCTC
  CTTGGAGGAG GTGTTTTTCT CAGTTGTGGG GTGGGTCTCC TCATCTTCAG CCCTTCGCCA
  TCAACAAATG CAGCTTCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60430595	NES15932053	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50849480					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60430595	NES15932053	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105099026 () rs orientation: forward

Symbol	Name	Function Class
Rr582682	regulatory region 582682	98 bp proximal