rs50848784 SNP Detail

Summary

• ID
  rs50848784
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:36121032 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTGCCGAG GGACTTGGAT
  TCTTGTGCTT TTCCAAGGCA GGAGGAAGAG CGCAGCCATC ATGTATCCCC TTCAGTCTTT
  AAATCTACCC TTCATCACCC GTGAGCTTTG CTGCCAGTTT TCCATTTCTG TATTTAGTGA
  GAGTCCCAGT GGTCAGCTCT CCTCCAGATG GTATCTACTT TCTATACTGT TGTGAGCTGT
  M
  TACCCCTAGC AAAGGCTGGC CTGGTGATTA GAACTCAGCT TTCTCACTAT TCAAGGATAA
  TTCTGCATCT TGGACCTGTG CCCTCAGGCT TTGGCCCAGT GGCCAGTGGT TTTCTCCACA
  TTGCTCACTT CTCATTCCCA TTCCTACCCC ACCCACCATT AGTAACTAAT GCAGATATGT
  ACTTAATGTT TGTTCTGAAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60387994	NES15892804	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50848784					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60387994	NES15892804	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:36121032 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Acad9	acyl-Coenzyme A dehydrogenase family, member 9			Intron
				Noncoding-Transcript-Variant
Cpgi13079	CpG island 13079			364 bp distal
Rr575304	regulatory region 575304			1821 bp distal
Rr575305	regulatory region 575305			1681 bp distal
Rr575306	regulatory region 575306			1501 bp distal
Rr575307	regulatory region 575307			806 bp distal
Tssr28859	transcription start site region 28859			879 bp downstream
Tssr28860	transcription start site region 28860			820 bp downstream
Tssr28861	transcription start site region 28861			781 bp downstream
Tssr28862	transcription start site region 28862			765 bp downstream