rs50845760 SNP Detail

Summary

• ID
  rs50845760
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27249237 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTATTTTG TGTGTGAGTG
  TGTGGGCACA GGTCTGTCAG AGCACACACG TGGAGGTCAA AGTTCAACTT GTAGGATTCA
  GTTCGCCTCC TCTTCATCAG CCTCAGAGGC TGGACTCAGG TCCTTAGGCC TAGCCGCAGG
  TGCCTTTACC TGCTGAGCCG TCTCCCTGAC TCTCTTCTGA ATGATTGAAC GTCCATTTTG
  R
  TGAGGCTGTT GAGCTTGCTA CAAAACCTCT GACTGAGGGT TTTTTTTAAA ATTTGTTTAA
  TTTTTTAAAA CTTTTTATTG ATTCATTGTG AGTTTCACAT CATACATCCA ACCCCACTCA
  TCTCCCTGTC CCTTCATTTT CTCCCTCTGC CCTTGTAGCT TCCCCCCAAA AGAAAAAAAA
  ATGCCTTGTG TGGAAGCTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60380364	NES15883551	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50845760					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60380364	NES15883551	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27249237 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nceh1	neutral cholesterol ester hydrolase 1			Intron
				Noncoding-Transcript-Variant
Rr574363	regulatory region 574363			653 bp distal
Rr574364	regulatory region 574364			1518 bp proximal
Tssr28611	transcription start site region 28611			822 bp downstream
Tssr28612	transcription start site region 28612			715 bp downstream
Tssr28613	transcription start site region 28613			389 bp downstream
Tssr32841	transcription start site region 32841			1004 bp upstream
Tssr32842	transcription start site region 32842			930 bp upstream
Tssr32843	transcription start site region 32843			882 bp upstream