rs50845078 SNP Detail

Summary

• ID
  rs50845078
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102380043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTCATTCT GTTGGGCCCC
  AGGCCACTCT TCTAATCTGT CTCTGTCTGC CTAATTTAGG TGACCACAAC CAATACCTGC
  CCCAGCCCCC CATTCCAGCC TTCCATGCCA CCTTTCTCAG CCTCTTCCAT AAGCCTCTCA
  TCTCAGGTTC TAGTACCATC CTGCCCTCTC AGCCTCCCAT CCCAGTGCCA TGCTAGCCTC
  Y
  TAGCCCAGCC TCCAATCCTC CTTTCTCCTC TCAGCTTTCT AGCTCAGGTG CGGGATGTTT
  GAATGAGCAT CCTCCCTAGC CTCCTCTGAG AGGTCCCGCA GCCATTCCTA CTTCTGGTCC
  CAGTCAGTGC TGCCTGCCAC ACATCTCTAC CTTCACTATC AACAAAGGTT GATCACGGAA
  GTCCAGCGAG AAGGAGCGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147115294	ENSMUSSNP1432034	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320438746	CHEV_2_102389855	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50845078					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102380043 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11977	CpG island 11977	68 bp proximal
Pamr1	peptidase domain containing associated with muscle regeneration 1	314 bp upstream
Rr561703	regulatory region 561703	within coordinates
Rr561704	regulatory region 561704	1205 bp proximal
Tssr19094	transcription start site region 19094	347 bp upstream
Tssr19095	transcription start site region 19095	401 bp upstream
Tssr19096	transcription start site region 19096	419 bp upstream
Tssr19097	transcription start site region 19097	440 bp upstream