rs50844402 SNP Detail

Summary

• ID
  rs50844402
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:8495451 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATGTGTT ATTAACACAT
  CAGAGTCCAA GGGGGAAAGG CACATGCCCC TGTACCCTGA AAGGATCACT TCCTTGCAGC
  TTGCTACATA GTTTAAGAGG AAGAAAACCA TTGGTTTAGG TCAGGGAGAA CTCTTTGCTA
  TGCTGAAGTC ATTTTCCCCT GTTCTAACGG TTACCTCAGC CAAAGTTGTA GGTCTGTTTC
  Y
  CCATCTGAAT ATGGAGGATA GTATTCATGG TGTAACTTGC GATAAAAACA TCATAGATTT
  GAAAGTGCTT AAAGAGTCCC ATGAGGTTCC TAGAAGATCC AGGAGACTGA AGAGGGAAGT
  TATGGAGAGC TGACACTTCT CTGTACGTTT GAATAGTTTC AGTTTCCATC TGTGGCTAAG
  TACTGCGCAT ATATCTGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132970260	ENSMUSSNP1691869	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50844402					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8495451 () rs orientation: forward

Symbol	Name	Function Class
Gm45062	predicted gene 45062	Intron
Rr626407	regulatory region 626407	within coordinates