rs50841623 SNP Detail

Summary

• ID
  rs50841623
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102378245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGATGCTTG CTTATACAAA
  TGTCTCCTGG TTGGAGAAGT TGACAATGAG GGAGAAAGCT CATACTGAGT TTTCTAAAGG
  TCAGTCTCAG GACAGACAAT GATGATGCCT AATATTTATT TACAGCAGCC GTGTGTGCTA
  GGCGTGCGGT ATCTTTGCAT GAATAATCTC ATTCCATCTT TCCAAGAGTT TCTAAAACAG
  K
  TTTGATCATT TTGCCTACTG TATACTGAAG ACAAGCTGAA AGAATTGAGT AACTCACTCA
  ATGTCATGTA GCTAGAAAGT GAAGCAAGGA CTTGAACACA GGTCATTGAA TGCTGAGTTC
  TCCCAGTCTC TTCAACTGCT CTTACCCATT CCCCTCCATG GATGGAGGGT CTGCCATTCT
  TACTAGCCCT GGCCTCCAGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss147115146	ENSMUSSNP2538841	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss320438711	CHEV_2_102388057	CHEVERUD	SCREENING_POP	f	SNP		T	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs50841623					SNP	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102378245 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11977	CpG island 11977	1866 bp proximal
Rr561703	regulatory region 561703	1731 bp proximal